Wiped, reflashed, and attempted to restore my AOKP ROM Control settings. The first thing I noticed was that although my nav bar buttons were back, they just reflected the default icons rather than my custom icons. When I went into the nav bar settings, no icons were shown at all. I had to reassign the button actions to get the default icons to show in ROM Control, before I could change back to my custom icons. And even though the colors of my nav bar and clock looked correct after the restore, the values shown inside ROM Control were just white (#ffffffff).
I don't require any specific support, just reporting some bugs, hopefully to be fixed in future releases.